As the first chill of autumn fills the air, I find myself reaching for hearty, cozy dishes that bring warmth to the table. Enter Spaghetti Squash Au Gratin—a dish that not only satisfies your cravings for comfort food but does so with a sprinkle of health. With its creamy texture and rich cheesy flavors, this is a delightful twist on traditional macaroni and cheese, perfect for those who crave something wholesome yet indulgent.
After a long day, there’s nothing quite like the enticing aroma of melted cheese wafting through the kitchen as this gratin cooks to perfection. The naturally sweet spaghetti squash transforms into a delicious canvas, ready to embody every luxurious bite. This versatile recipe caters to diverse dietary needs; it’s healthy, gluten-free, and vegetarian-friendly, making it a favorite for both casual weeknight meals and impressive dinner parties. Want to bump up the flavor? Feel free to add your favorite ingredients for a personal touch!
Join me as we dive into this delightful dish that will surely become a staple in your own kitchen!
Why is Spaghetti Squash Au Gratin So Irresistible?
Comforting Texture: This dish features a creamy and cheesy interior that perfectly complements the tender strands of spaghetti squash.
Guilt-Free Indulgence: Savor the rich flavors without the heaviness, making it a fantastic healthy alternative to traditional gratins.
Customizable Options: From adding proteins like chicken to tossing in vegetables, it’s easy to personalize this recipe to suit your tastes.
Quick to Prepare: With just a few simple steps, you can enjoy a delicious homemade meal that impresses in under an hour.
Perfect for Gatherings: This crowd-pleaser shines at gatherings, appealing to both health-conscious eaters and cheese lovers alike.
Add this dish to your weeknight routine with ease, and enjoy the benefits of nutritious comfort food!
Spaghetti Squash Au Gratin Ingredients
• Delicious and healthy ingredients await!
For the Squash
- Spaghetti Squash – This unique vegetable offers a naturally sweet flavor and a satisfying texture as the base of your dish.
For the Cheese Sauce
- Unsalted Butter (4 tbsp) – This adds richness to the sauce; substitute with olive oil for a dairy-free version.
- Yellow Onion (1 medium) – Essential for the depth of flavor, enhancing the overall dish; stick to medium-sized for balance.
- Garlic (2 cloves) – Fresh garlic elevates the flavor profile; always opt for fresh to get that aromatic punch.
- All-Purpose Flour (4 tbsp) – This thickens the cheese sauce; use a gluten-free blend to suit dietary needs.
- Whole Milk (3 cups) – For creating that creamy sauce; swap with skim or unsweetened almond milk for a lighter option.
- Salt (1/2 tsp, plus to taste) – Necessary for seasoning; use to enhance the flavors of both the sauce and squash.
- Black Pepper (1/4 tsp, plus to taste) – Provides a touch of heat; fresh cracked pepper is recommended for the best flavor.
- Nutmeg (1/4 tsp) – A classic seasoning that complements creamy dishes; this elevates the overall flavor of your Spaghetti Squash Au Gratin.
For the Cheese Topping
- Gruyere Cheese (1 cup, divided) – Melts beautifully and adds a nutty flavor; Swiss cheese is a great substitute if needed.
- Sharp Cheddar Cheese (1 cup, divided) – Contributes tang and richness; consider mild cheddar if you prefer a milder taste.
- Parmesan Cheese (1/2 cup, divided) – Adds umami and richness; Pecorino can be an alternative for a saltier kick.
- Panko Breadcrumbs (1/4 cup) – For that delightful crunch on top; choose gluten-free breadcrumbs for a wholesome option.
- Fresh Parsley (2 tbsp, optional) – Bring some color and freshness to your dish with this garnish; chives can be used as a substitute for a different flavor note.
How to Make Spaghetti Squash Au Gratin
-
Preheat the oven to 400°F (200°C). This ensures your gratin cooks evenly and develops that perfect golden crust.
-
Prepare the spaghetti squash by cutting it in half and scooping out the seeds. Drizzle each half with melted butter and season generously with salt and pepper.
-
Roast the squash cut-side down on a parchment-lined baking sheet for 45-60 minutes, or until tender. You’ll know it’s ready when you can easily pierce the flesh with a fork.
-
Shred the cooked squash using a fork to create strands. This texture gives your gratin that signature noodle-like quality.
-
Sauté the diced onion in a saucepan over medium heat until softened. Then, add minced garlic and cook for an additional minute until fragrant.
-
Whisk in flour to create a roux, cooking for about 1-2 minutes. Gradually pour in the milk while whisking continuously until smooth and combined.
-
Simmer the sauce over low heat until slightly thickened. Season with salt, pepper, and nutmeg, bringing the flavors together beautifully.
-
Melt in 3/4 cup each of gruyere and sharp cheddar cheese, stirring until completely melted and creamy. Reserve the remaining cheese for topping.
-
Combine the shredded squash with the cheese sauce, mixing thoroughly. Transfer the mixture to a greased baking dish, ensuring even distribution.
-
Prepare the topping by mixing the reserved cheese with panko breadcrumbs. Sprinkle this crunchy blend evenly over the squash mixture.
-
Bake the gratin in the preheated oven for 20-25 minutes, or until the top is golden and bubbly—a beautiful sight to behold!
-
Let rest for 5-10 minutes before slicing. Garnish with fresh parsley for a pop of color and an added touch of freshness.
Optional: Add a sprinkle of extra grated cheese on top before baking for a cheesier finish!
Exact quantities are listed in the recipe card below.
Make Ahead Options
These Spaghetti Squash Au Gratin are perfect for busy weeknights when you want to enjoy a homemade meal without all the last-minute fuss! You can roast the spaghetti squash and prepare the cheese sauce up to 24 hours in advance. Simply let the roasted squash cool, shred it into strands, and store it in an airtight container in the fridge. Similarly, prepare the cheese sauce, letting it cool before transferring it to another airtight container. When you’re ready to serve, combine the squash and sauce in a greased baking dish, sprinkle with cheese and breadcrumbs, and bake directly from the refrigerator; just add an extra 5-10 minutes to the baking time for a delicious, comforting dish that remains just as delightful!
Spaghetti Squash Au Gratin Variations
Unlock a world of flavors by customizing your Spaghetti Squash Au Gratin with these delightful twists!
-
Protein Boost: Add cooked chicken, crumbled sausage, or crispy bacon bits for a heartier meal that the whole family will love. These savory additions elevate your dish, making it a satisfying weeknight dinner.
-
Spicy Kick: Incorporate red pepper flakes in the cheese sauce for an extra layer of heat. Just a pinch can transform the flavor profile and please spice lovers at your table.
-
Cheese Experimentation: Try different cheese combinations like Fontina or blue cheese for unique flavor profiles. Each cheese brings its character, inviting a gourmet twist to your classic rendition.
-
Veggie Power: Fold in sautéed mushrooms, spinach, or zucchini for added nutrition and a pop of color. Boosting the dish with veggies not only enhances the flavor but also packs in healthy benefits.
-
Dairy-Free Delight: Swap out whole milk for unsweetened almond milk and use a dairy-free cheese alternative for a creamy, dairy-free version that everyone can enjoy. Enjoy guilt-free indulgence without sacrificing your health goals!
-
Herb Infusion: Fresh thyme or rosemary can add aromatic notes to the cheese sauce. These herbs will elevate the dish’s fragrance, making each bite a delight.
-
Nutty Crunch: Instead of panko, use crushed nuts like walnuts or almonds for an added crunch and nutritious twist. This change not only enhances the texture but also adds healthy fats.
-
Zesty Lemon: A squeeze of lemon juice or zest sprinkled on top before serving adds a refreshing brightness to balance the richness of the dish. It’s a simple way to bring your Spaghetti Squash Au Gratin to life!
What to Serve with Spaghetti Squash Au Gratin?
Elevate your dining experience with delightful pairings that complement this creamy, cheesy dish beautifully.
-
Grilled Chicken: The smoky flavors of grilled chicken perfectly balance the rich, cheesy gratin, making for a well-rounded meal.
-
Roasted Pork Tenderloin: Succulent roasted pork adds a savory element that enhances the delightful sweetness of spaghetti squash.
-
Fresh Green Salad: A crisp salad, drizzled with vinaigrette, brings a burst of freshness to the rich gratin, ideal for a balanced plate.
-
Steamed Broccoli: Tender steamed broccoli adds vibrant color and a nutritious touch, while its mild flavor harmonizes with the gratin.
-
Garlic Bread: Crunchy, buttery garlic bread is perfect for scooping up the creamy sauce, enhancing the comfort food aspect of the meal.
-
Herb-Infused Quinoa: This nutty superfood serves as a healthy base that absorbs any cheese and sauce remnants, along with providing a delightful chew.
-
Light White Wine: A chilled sauvignon blanc or chardonnay beautifully complements the cheese’s richness while refreshing your palate.
-
Lemon Sorbet: To cleanse the palate, this bright, icy treat offers a zesty contrast, rounding off your meal on a refreshing note.
-
Baked Apples: Warm, spiced baked apples provide a sweet, comforting dessert option that harmonizes with the gratin’s savory flavors, creating a cozy meal experience.
Expert Tips for Spaghetti Squash Au Gratin
-
Quality Ingredients: Choose fresh, high-quality ingredients, especially cheese, to elevate the flavors of your Spaghetti Squash Au Gratin and ensure a delicious outcome.
-
Avoid Overcooking: Be careful not to overcook the spaghetti squash; this prevents it from becoming mushy and maintains that delightful noodle texture.
-
Season Generously: Don’t hold back on seasoning the sauce and squash with salt and pepper; adjusting these seasonings according to your taste will enhance the final dish dramatically.
-
Make-Ahead Option: Assemble your gratin ahead of time and store it in the fridge for up to 24 hours. Just remember to add a few extra minutes to the baking time if it’s cold.
-
Experiment with Toppings: Feel free to experiment with various cheese combinations and breadcrumbs to customize your gratin’s flavor and texture, keeping it exciting every time!
Storage Tips for Spaghetti Squash Au Gratin
Room Temperature: Allow the Spaghetti Squash Au Gratin to cool completely before storing. This dish should not be left out for more than 2 hours to ensure food safety.
Fridge: Store leftovers in an airtight container in the refrigerator for up to 3-4 days. Reheat in the oven for best results, covered with foil to maintain moisture.
Freezer: For longer storage, freeze the gratin in an airtight container for up to 3 months. Thaw overnight in the fridge before reheating in the oven to help restore its creamy texture.
Reheating: Reheat individual portions in the microwave, or warm the entire dish in the oven at 350°F (175°C) until heated through, approximately 25 minutes. Enjoy your delicious Spaghetti Squash Au Gratin!
Spaghetti Squash Au Gratin Recipe FAQs
How do I choose the right spaghetti squash?
When selecting spaghetti squash, look for firm, heavy squash with a smooth, unblemished skin. Avoid those with dark spots or soft areas, as they may be overripe. A good squash should feel solid and not have any notable discolorations.
How do I store leftovers and how long do they last?
After allowing your Spaghetti Squash Au Gratin to cool, place it in an airtight container to keep it fresh. It can be stored in the refrigerator for 3-4 days. Make sure to reheat it in the oven or microwave until heated through. For optimal quality, gently reheat covered with foil to retain moisture.
Can I freeze Spaghetti Squash Au Gratin?
Absolutely! To freeze, first cool the gratin completely, then place it in an airtight container or freezer bag, sealing as much air out as possible. It can be frozen for up to 3 months. When ready to enjoy, thaw overnight in the refrigerator and reheat in the oven at 350°F (175°C) until warmed through, usually around 25 minutes.
What if my cheese sauce isn’t thickening properly?
If your cheese sauce isn’t thickening as expected, ensure you’ve cooked your roux (butter and flour mixture) adequately before adding the milk; a minute or two should suffice. If it’s still too thin, don’t fret! You can whisk in a bit more flour or cornstarch mixed with cold milk slowly until you reach the desired consistency, cooking just a few more minutes until thickened.
Is Spaghetti Squash Au Gratin suitable for various dietary needs?
Yes! This dish is naturally gluten-free as long as you use gluten-free flour for the sauce and gluten-free panko breadcrumbs for the topping. It’s also vegetarian-friendly, making it a great choice for various dietary preferences. If you have dairy sensitivities, feel free to substitute with dairy-free cheese and almond milk for a delightful alternative.

Delicious Spaghetti Squash Au Gratin: Comfort Food Redefined
Ingredients
Equipment
Method
- Preheat the oven to 400°F (200°C) for even cooking.
- Prepare the spaghetti squash by cutting it in half and scooping out the seeds. Drizzle with melted butter and season with salt and pepper.
- Roast the squash cut-side down on a parchment-lined baking sheet for 45-60 minutes, or until tender.
- Shred the cooked squash with a fork to create strands.
- Sauté the diced onion in a saucepan over medium heat until softened, then add minced garlic and cook until fragrant.
- Whisk in flour to create a roux, cooking for about 1-2 minutes before gradually pouring in milk.
- Simmer the sauce until slightly thickened, season with salt, pepper, and nutmeg.
- Melt in 3/4 cup each of gruyere and sharp cheddar cheese, stirring until creamy.
- Combine shredded squash with cheese sauce, transfer to a greased baking dish.
- Prepare topping by mixing reserved cheese with panko breadcrumbs.
- Bake the gratin for 20-25 minutes until golden and bubbly.
- Let rest for 5-10 minutes before slicing and garnish with fresh parsley.







